Community Consultation

HGVS nomenclature falls under the responsibility of the SVD-WG (Sequence Variant Description Working Group). The SVD-WG handles requests to change or extend HGVS nomenclature operating according to a charter defining its activities (see HVP website) which includes a Community Consultation step. Any proposal made by the SVD-WG will be published on this web page. When published, the proposal is open for comments for a 2-month period. Everybody interested is asked to study the proposal and send comments, positive or negative, to the SVD-WG. Comments to proposals should be addressed to “Varnomen @ variome.org”, Subject: SVD-WGxxx (xxx the proposal number, e.g. SVD-WG001).

To ensure you do not miss a new proposal please register for e-mail notification). Those registered will also receive notification when the HGVS nomenclature version number changes. The latest version of the HGVS recommendations can be found at the Versioning page.

Open

• SVD-WG008 (RefSeq)

  suggests to specify the HGVS recommendations for acceptable Reference Sequences

  Status: open. Opened Jul.20 (2019), closes Sep.30 (2019).

Closed

• SVD-WG007 (RNA fusion)

  suggests to extend the HGVS recommendations with a format to decribe RNA fusion transcripts following the format to describe a fusion between two DNA molecules (translocations), i.e. using ”::”

  Status: under review SVD-WG. Opened Apr.10 (2019), closed Jun.30 (2019).

• SVD-WG006 (circular DNA)

  suggests to extend the HGVS recommendations allowing a “o.” prefix for circular genomic reference sequences.

  suggests to add the exception for circular genomic reference sequences (“m.” and “o.” prefix) to allow NC_012920.1:m.16563_13del

  Status: accepted. Closed Oct.30 (2018), opened Aug.1 (2018).

• SVD-WG005 (gom/lom)

  suggests to extend the HGVS recommendations to allow description of changes in general methylation status.

  Status: accepted. Closed Dec.31 (2016). Opened Oct.20 (2016).

• SVD-WG004 (ISCN<>HGVS)

  suggested to extend the recommendations to cover the description of structural variants, esp. translocations and chromothripsis.

  Status: accepted. Closed Jan.15 (2016). Opened Nov.10 (2015).

  NOTE: since SVD-WG004 covers variants that may become rather complex to describe and will be difficult to implement the proposal has been accepted as the “named extension ISCN” (named extension).

• SVD-WG003 (exon del/dup)

  suggested to describe exon deletions/duplications using the format c.(233+1_234-1)_(1234+1_1235-1)del.

  Status: Oct.6 (2015) new proposal to be made. Closed Jul.16 (2015). Opened May 14 (2015).

• SVD-WG002 (n. prefix)

  suggested to accept a non-coding DNA reference sequence (n.345A>G, n.224+1G>T, n.696-38544del).

  Status: Oct.6 (2015) accepted. Closed Jul.16 (2015). Opened May 14 (2015).

• SVD-WG001 (no change)

  suggested to allow reporting of variants that were tested but found to be unchanged (g.50377648A=, c.1823A=, r.377u=, p.Val76=).

  Status: Oct.6 (2015) accepted. Closed Jul.16 (2015). Opened May 14 (2015).